Software Resources

R

JMP

R GUIs

SPSS


Analysis Resources

Data Organization “Cheat Sheet”

Data Organization in Spreadsheets (Broman and Woo, 2017)

UCLA/IDRE offers detailed tutorials for a variety of analysis topics and software:

Extending the Linear Model with R (Faraway) covers generalized linear models (including logistic and count regression), mixed models (including repeated measures and longitudinal data), nonparametric regression and additive models.  This is available as a free pdf. 

Applied Predictive Modeling (Kuhn and Kell) is available as a full ebook from the CSU library.

An Introduction to Categorical Data Analysis (Agresti) is available as a full ebook from the CSU library.  Chapter 6 covers ordinal and multinomial logistic regression.

Mixed-effects models in S and S-plus (Pinheiro and Bates) is available as a full ebook from the CSU library.

Generalized Linear Models with Examples in R (Dunn and Smyth) is available as a full ebook from the CSU library.

Handbook of Meta-analysis in Ecology and Evolution (Gurevitch, Koricheva, Mengersen) is available as a full ebook from the CSU library.

Model selection in ecology and evolution (Johnson and Omland, 2004)